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    1. Besharatifard M; Vafaee F, 2024, Artificial Intelligence Review, 57

    2. Alizadeh F; Jazayeriy H; Jazayeri O; Vafaee F, 2024, International Journal of Engineering, Transactions A: Basics, 37, pp. 412 - 424

    3. Thoms JAI; Koch FC; Raei A; Subramanian S; Wong JWH; Vafaee F; Pimanda JE, 2024, Nucleic Acids Research, 52, pp. D1131 - D1137

    1. Subramanian S; Thoms JAI; Huang Y; Cornejo Paramo CP; Koch FC; Jacquelin S; Shen S; Song E; Joshi S; Brownlee CP; Woll PS; Chacon-Fajardo D; Beck D; Curtis DJ; Yehson K; Antonenas V; O'Brien T; Trickett A; Powell JA; Lewis ID; Pitson SM; Gandhi MK; Lane SW; Vafaee F; Wong E; Gottgens B; Rokny H; Wong JWH; Pimanda JE, Blood

    2. Choi WWY; Sánchez C; Li JJ; Dinarvand M; Adomat H; Ghaffari M; Khoja L; Vafaee F; Joshua AM; Chi KN; Guns EST; Hosseini-Beheshti E, Journal of Cancer Research and Clinical Oncology, 149, pp. 4701 - 4717

    3. Zandavi SM; Liu D; Chung V; Anaissi A; Vafaee F, Artificial Intelligence Review, 56, pp. 7263 - 7278

    4. Safari F; Kehelpannala C; Safarchi A; Batarseh AM; Vafaee F, Cancers, 15, pp. 2780 - 2780

    5. Ahmadzada T; Vijayan A; Vafaee F; Azimi A; Reid G; Clarke S; Kao S; Grau GE; Hosseini-Beheshti E, Cancers, 15, pp. 2364 - 2364

    6. Mandal A; Priyam S; Chan HH; Gouveia BM; Guitera P; Song Y; Baker MAB; Vafaee F, Cancers, 15, pp. 1428 - 1428

    7. Khazaal A; Zandavi SM; Smolnikov A; Fatima S; Vafaee F, International Journal of Molecular Sciences, 24, pp. 4796 - 4796

    8. Gano C; Fatima S; Failes T; Arndt G; Sajinovic M; Mahns D; Saedisomeolia A; Coorssen J; Bucci J; DeSouza P; Vafaee F; Scott K, Frontiers in Nutrition

    9. Batarseh AM; Vafaee F; Hosseini-Beheshti E; Safarchi A; Chen A; Cohen A; Juillard A; Hunt NH; Mariani M; Mitchell T; Grau GER, International Journal of Molecular Sciences, 24, pp. 501 - 50

    10. Gunawan I; Vafaee F; Meijering E; Lock JG, Cell Reports Methods, pp. 100547 - 100547

    1. Vijayan A; Fatima S; Sowmya A; Vafaee F, Briefings in Bioinformatics, 23

    2. Zandavi SM; Koch FC; Vijayan A; Zanini F; Mora FV; Ortega DG; Vafaee F, Nucleic Acids Research, 50, pp. 5482 - 5492

    3. Fatima S; Ma Y; Safrachi A; Haider S; Spring KJ; Vafaee F; Scott KF; Roberts TL; Becker TM; de Souza P, Cancers, 14, pp. 1669 - 1669

    4. Qayyum A; Benzinou A; Razzak I; Mazher M; Nguyen TT; Puig D; Vafaee F, IEEE Journal of Biomedical and Health Informatics, pp. 1 - 9

    5. Dinarvand M; Koch FC; Mouiee DA; Vuong K; Vijayan A; Tanzim AF; Azad AKM; Penesyan A; Castaño-Rodríguez N; Vafaee F, Microbial Genomics, 8

    1. Safarchi A; Fatima S; Ayati Z; Vafaee F, Cell and Bioscience, 11

    2. Scott KF; Mann TJ; Fatima S; Sajinovic M; Razdan A; Kim RR; Cooper A; Roohullah A; Bryant KJ; Gamage KK; Harman DG; Vafaee F; Graham GG; Church WB; Russell PJ; Dong Q; de Souza P, Molecules, 26, pp. 7267 - 7267

    3. Zandavi SM; Rashidi TH; Vafaee F, IEEE Transactions on Cybernetics, pp. 1 - 13

    4. Koch FC; Sutton GJ; Voineagu I; Vafaee F, Briefings in Bioinformatics, 22

    5. Azad AKM; Dinarvand M; Nematollahi A; Swift J; Lutze-Mann L; Vafaee F, Briefings in Bioinformatics, 22

    6. Shahriari S; Hossein Rashidi T; Azad AKM; Vafaee F, F1000Research, 10, pp. 1110 - 1110

    7. Azad AKM; Fatima S; Capraro A; Waters SA; Vafaee F, Patterns, pp. 100325

    8. Capraro A; Wong S; Adhikari A; Allan K; Patel H; Zhong L; Raftery M; Jaffe A; Yeang M; Aggarwal A; Wu L; Pandzic E; Whan R; Turville S; Vittorio O; Bull R; Kaakoush N; Rawlinson W; Tedla N; Vafaee F; Waters S,

    1. Bayati M; Rabiee HR; Mehrbod M; Vafaee F; Ebrahimi D; Forrest ARR; Alinejad-Rokny H, Scientific Reports, 10, pp. 1286

    2. Dinarvand M; Spain MP; Vafaee F, Frontiers in Microbiology, 11

    3. Azad AKM; Fatima S; Vafaee F,

    4. Walsh K; Voineagu MA; Vafaee F; Voineagu I, Bioinformatics, 36, pp. 4805 - 4809

    5. Colvin EK; Howell VM; Mok SC; Samimi G; Vafaee F, Cancer Science, 111, pp. 1805 - 1817

    6. Ebrahimkhani S; Beadnall HN; Wang C; Suter CM; Barnett MH; Buckland ME; Vafaee F, Molecular Neurobiology, 57, pp. 1245 - 1258

    1. °Â´Ç²Ô²µÌýet al., PLoS ONE 2019

    2. ´¡³ú²¹»åÌýet al., arXiv. 2019

    3. µþ²¹²â²¹³Ù¾±Ìýet al. Scientific Reports, bioRxiv, 424960
    4. Deep Learning meets single-cell omics to personalise medicine.
      Fatemeh Vafaee and A. K. M. Azad, Briefings in Bioinformatics [under review]
    5. Prognostic utility of lncRNAs in ovarian cancer-associated fibroblasts.
      °ä´Ç²Ô±ô±¹¾±²ÔÌýet al., Cancers [under review]
    6. Global redox proteome and phosphoproteome analysis reveals widespread crosstalk and signal dysregulation induced by oxidative stress
      ³§³ÜÌýet al., Nature Communiations [under review]
    7. Serum exosome microRNAs predict multiple sclerosis disease activity after fingolimod treatment
      ·¡²ú°ù²¹³ó¾±³¾°ì³ó²¹²Ô¾±Ìýet al., Frontiers in Neurology [under review]

    1. ·¡²ú°ù²¹³ó¾±³¾°ì³ó²¹²Ô¾±Ìýet al., NPJ precision oncology, Nature; 2018

    2. ³Õ²¹´Ú²¹±ð±ðÌýet al., NPJ Syst Biol Appl. 2018 Jun 1;4:20

    3. °ä´Ç²Ô³Ù²¹±ô»å¾±Ìýet al., Artificial Intelligence Review. 2018; 1-28

    4. °ä³ó²¹³Ü»å³ó³Ü°ù¾±Ìýet al., Scientific reports. 2018; 8 (1), 1774

    5. ³Õ²¹´Ú²¹±ð±ðÌýet al., Encyclopedia Of Bioinformatics and Computational Biology, Reference Module in Life Sciences, Elsevier

    1. ³Õ²¹´Ú²¹±ð±ðÌýet al., Scientific Reports, Nature; 2017

    2. ·¡²ú°ù²¹³ó¾±³¾°ì³ó²¹²Ô¾±Ìýet al., Scientific Reports, Nature; 2017

    1. ³Õ²¹´Ú²¹±ð±ðÌýet al., PLoS One; 2016

    2. ³Õ²¹´Ú²¹±ð±ðÌýet al., Scientific Reports; 2016

    3. ±·¾±³¦´Ç±ô±ðÌýet al., Scientific Reports; 2016

    4. ¶Ù´Ç³¾²¹²Ô´Ç±¹²¹Ìýet al., PLoS One; 2016

    1. ¸é´Ç±ô±ô´ÇÌýet al., Alzheimer’s & Dementia; 2015

    1. °­´Ç³Ù±ô²â²¹°ùÌýet al., Nature Methods; 2014

    1. ³Õ²¹´Ú²¹±ð±ðÌýet al., BMC Systems Biolog; 2013

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A multidisciplinary team collaborating with health organizations, research groups, and industry partners nationally and internationally to drive positive societal impact.

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Collaborative AI research to advance biomedical frontiers from disease diagnosis and drug discovery to single-cell multi-omics, with a commitment to precision, reproducibility, interpretability, and trust.

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